miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Pseudoroegneria spicata, Triticum monococcum, Triticum turgidum subsp. durum, Brachypodium distachyon, Triticum aestivum



ABOUT THIS RECORD

ID: MNEST001382
species: Leymus cinereus x Leymus triticoides
miRNA family: MIRf341
source: miRNEST

Taxonomy by NCBI:
Leymus cinereus x Leymus triticoides Leymus Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 ACTAGTACTCCCTCCGTCCCG

miRNA*
 GGACGGAGGGAGTAGTAGTTA

mismatches: 2
bulges: 0
View larger
pre-miRNA
 AATGTTCCACTAGTACTCCCTCCGTCCCGAATTACTTGTCGCAGAAATGAATAAAAATGGATGTATCTAGAACTAAAATACGTCTAGATACACCCATTTC
CGCGACAAGTAATTTCGGACGGAGGGAGTAGTAGTTATCACC

dot-bracket secondary structure
........((((.((((((((((((((.((((((((((((((.((((((.........((.((((((((((...........))))))))))))))))))
.)))))))))))))).)))))))))))))).)))).......


SIMILARITIES
miRBase tae-MIR1135: 6e-25

PMRD ata-miR1122: 7e-43

microPC miR1135: 9e-24		UniProt no hits

RFAM MIR1122: 1e-41		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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